PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 225aa    MW: 26167 Da    PI: 9.6248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15130219198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  k  ++  +tl de+  ++  k+   k++    l++GW++F+ +++L +gD +vF+l++ ++f  +v 
  XP_016513011.1 130 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFVTKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLIEPTKF--KVY 216
                     89*********************999423..4457***************666665....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016513011.1 217 IIR 219
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-19121220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-23123221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-24128219No hitNo description
SMARTSM010194.0E-20130221IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237130221IPR003340B3 DNA binding domain
PfamPF023625.1E-13130219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVESKKKMLA YEESRLKRLE ENKKRMEELN LNKLVQAVRT ATSPKPSPMK KVKPRVKQEI  60
DRSAVRRSNR VADKPPPNYK DVPIEPLGKP RSYKRRDLLN RVYADDEDRQ YAIERAEQLQ  120
SEIDADFPSF VKPMLQSHVT GGFWLGLPVH FCNTHLPKRD EFVTLIDENE DEFVTKYLAL  180
KRGLSGGWRG FAIDHELVDG DALVFQLIEP TKFKVYIIRV NQAED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772546.11e-166PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_016513011.11e-166PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M31e-87Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A0V0HLY91e-138A0A0V0HLY9_SOLCH; Putative B3 domain-containing protein-like
STRINGPGSC0003DMT4000663231e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-85B3 family protein